SubtiBank SubtiBank
yfmJ [2019-06-25 10:31:35]
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yfmJ [2019-06-25 10:31:35]

similar to predicted oxidoreductase, Zn-dependent and NAD(P)-binding
locus
BSU07450
pI
4.75
mw
36.51 kDa
protein length
339 aa Sequence Blast
gene length
1020 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]

    • Gene

    Coordinates
    817,810 → 818,829

    The protein

    Structure

  • [PDB|4B7C] (from ''Pseudomonas Aeruginosa'', 48% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|3DFC1A118B346C7939851BF711FFA31E04A698E8|yfmI]-[gene|B61458337D96A0CF8D0778A03A0DB68B566913D8|yfmJ]
    description
    [Pubmed|22383849]

    regulatory mechanism

  • [protein|2C54FE2ADC82FF414D732018C90649D477A925AD|Spo0A]: activation, [Pubmed|14651647], in [regulon|2C54FE2ADC82FF414D732018C90649D477A925AD|Spo0A regulon]
  • [protein|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB]: repression, [Pubmed|20817675], in [regulon|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB regulon]

    • regulation

  • expressed under conditions that trigger sporulation ([SW|Spo0A]) [Pubmed|14651647]

    • additional information

  • A [protein|search|ncRNA] is predicted between '[protein|3DFC1A118B346C7939851BF711FFA31E04A698E8|YfmI]' and '[protein|893BB8D1B43F10B46BB7F2DBFE9BE63E9AEEE8EB|YfmG]' [PubMed|20525796]
    • view in new tab

    genes
    [gene|B61458337D96A0CF8D0778A03A0DB68B566913D8|yfmJ]
    description
    [Pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • MGNA-C241 (yfmJ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2239 NBRP B. subtilis, Japan]
  • BKE07450 (Δ[gene|B61458337D96A0CF8D0778A03A0DB68B566913D8|yfmJ]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE07450 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTCATCCTCCTATCAC, downstream forward: _UP4_TGAATGAAGATGAAAACGGG
  • BKK07450 (Δ[gene|B61458337D96A0CF8D0778A03A0DB68B566913D8|yfmJ]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK07450 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTCATCCTCCTATCAC, downstream forward: _UP4_TGAATGAAGATGAAAACGGG

    • References

  • 14651647